rs31339154 SNP Detail

Summary

• ID
  rs31339154
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:3211888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATCTCAGC AGAAAGCTGG AGAGGGACAG GGTACCACAA
  ACACCTGGCT TGTAACAGGG GGGAAGAGGG TACCTCTAAC AACCAGTGGT TGAAAGCTAG
  R
  CATGTTGTTA CTCAGTATTT TACTACAGAC CCACAGCCCC CAGTATAGGA AAAAACCCTG
  TCTCACATTC TGCCCTCCAG TGCCTTGGAT TTTATATCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46021770	mCV24205840	ABI	CRAMUS_MOUSE	f	SNP	G	A					A		G
ss63342909	NES17509432	PERLEGEN	MM_PANEL2	r	SNP	C	T	T	T	C	C		C	C	T	T		C	T	T	C		C
ss148163313	ENSMUSSNP4594810	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
ss322090981	CHEV_7_3162049	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31339154					SNP	G	A	A	A	G	G	A	G	G	A	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63342909	NES17509432	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:3211888 () rs orientation: forward

Symbol	Name	Function Class
AU018091	expressed sequence AU018091	within coordinates
Rr156086	regulatory region 156086	1488 bp distal