rs31339626 SNP Detail

Summary

• ID
  rs31339626
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:50297611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATTATATTG TCTTTTGTTC CCATTCATGC ACATATAACT
  TCATGTGCTG TACTCTCTGA TTGTCAGACT GATGAAGAAA AGACTAGAGT GTTGTTTACT
  R
  TGATGTGGAG AGTTGTACAA TTAAAACAAC TTTTTGGAAC TGTCCTGAAA GGCAGTGGTG
  AAGAGAAATC TTTGTGATGG ATGAACTTCA GGTAGTACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss39279400	mCV23499632	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss139454951	ENSMUSSNP6267554	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A		G
ss324615142	CHEV_14_50679829	CHEVERUD	SCREENING_POP	f	SNP					A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs31339626					SNP	A	A	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:50297611 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6404	CpG island 6404	1526 bp proximal
Gm37194	predicted gene, 37194	1206 bp upstream
Rr491685	regulatory region 491685	903 bp proximal
Tssr125363	transcription start site region 125363	1203 bp upstream