rs31341209 SNP Detail

Summary

• ID
  rs31341209
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:125870186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGT AGAGGGCAGA AGTTGACATT
  R
  TCAGGTGTAT TCTTCAATCC CTCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46022172	mCV25172307	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss145871760	ENSMUSSNP4349312	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss322450382	CHEV_7_133414528	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31341209					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125870186 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19689	CpG island 19689	703 bp proximal
Rr368426	regulatory region 368426	734 bp upstream
Rr381444	regulatory region 381444	within coordinates
Rr655453	regulatory region 655453	1115 bp proximal
Sbk1	SH3-binding kinase 1	Intron
Tssr69002	transcription start site region 69002	1399 bp upstream
Tssr69003	transcription start site region 69003	1414 bp upstream
Tssr69004	transcription start site region 69004	1430 bp upstream
Tssr69005	transcription start site region 69005	1449 bp upstream
Tssr69006	transcription start site region 69006	1461 bp upstream
Tssr69007	transcription start site region 69007	1492 bp upstream
Tssr69008	transcription start site region 69008	1512 bp upstream
Tssr69009	transcription start site region 69009	1575 bp upstream
Tssr69010	transcription start site region 69010	1770 bp upstream
Tssr69011	transcription start site region 69011	1833 bp upstream