rs31341233 SNP Detail

Summary

• ID
  rs31341233
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156267033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAT ATCATTTATG GGCTGGAGGA
  R
  TAGTTTAATA GGACAGTATG CCACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45022070	mCV23089507	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss145796603	ENSMUSSNP3265541	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs31341233					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156267033 () rs orientation: forward

Symbol	Name	Function Class
Rr31351	regulatory region 31351	1373 bp distal
Rr396421	regulatory region 396421	1848 bp downstream
Soat1	sterol O-acyltransferase 1	within coordinates
Tssr9565	transcription start site region 9565	232 bp upstream
Tssr14442	transcription start site region 14442	144 bp upstream
Tssr14443	transcription start site region 14443	1919 bp downstream
Tssr14444	transcription start site region 14444	1937 bp downstream