rs31342047 SNP Detail

Summary

• ID
  rs31342047
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86234162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCC GAGAACCTGG ATCTCTCCTA
  Y
  CTTGGGCCTC TAGCCTGACC TCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45022484	mCV22889928	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss144875362	ENSMUSSNP1519803	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss319828019	CHEV_1_88203015	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31342047					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86234162 () rs orientation: forward

Symbol	Name	Function Class
B3gnt7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	within coordinates
Rr366828	regulatory region 366828	within coordinates
Rr414520	regulatory region 414520	1579 bp proximal
Tssr7739	transcription start site region 7739	337 bp upstream
Tssr12766	transcription start site region 12766	1954 bp downstream