rs31346111 SNP Detail

Summary

• ID
  rs31346111
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:160023927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCC ACTTGTACTG CTTACAGTTC
  M
  AGTGCGTATT AGCTGTATCC ATGGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45082447	mCV23053107	ABI	CRAMUS_MOUSE	f	SNP	C	C					C		A
ss49728785	NES13057519	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C	C		C	A	C	C	A	C	C	A	C
ss145886080	ENSMUSSNP6154661	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31346111					SNP	C	C	C	A	C	C	C	C	A	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49728785	NES13057519	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160023927 () rs orientation: forward

Symbol	Name	Function Class
Cpgi916	CpG island 916	777 bp distal
Mrps14	mitochondrial ribosomal protein S14	within coordinates
Rr28809	regulatory region 28809	within coordinates
Rr372319	regulatory region 372319	592 bp downstream
Tssr9641	transcription start site region 9641	1091 bp downstream