rs31347352 SNP Detail

Summary

• ID
  rs31347352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181942946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAG TTACCTGGTC AGGCAGGGGC
  Y
  GGAAGACTTC TGTGGAACCC TGAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss45022571	mCV24017127	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss146402230	ENSMUSSNP2285730	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs31347352					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181942946 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1142	CpG island 1142	1998 bp distal
Gm33725	predicted gene, 33725	within coordinates
Gm39719	predicted gene, 39719	1740 bp downstream
Rr424860	regulatory region 424860	1341 bp distal
Rr424861	regulatory region 424861	840 bp distal
Rr424862	regulatory region 424862	within coordinates
Rr424863	regulatory region 424863	28 bp proximal
Rr424864	regulatory region 424864	412 bp proximal
Rr424865	regulatory region 424865	506 bp proximal