rs31347374 SNP Detail

Summary

• ID
  rs31347374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:160022248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAGTATG ATGGCAGGGA
  CTCCTGGTTG TCTTATCCTG CCAAATGGTT TCAGTCAGAG TTTCCCTAGC CCATTAGAAA
  TGTTCACTAA CTTGTAACGC TTAAAGAAAA AAACTCTCCT TCTTCCTGGG AGCTTCCTGT
  GTAAAGAGCC CAATGGGCTG TTCCTCACTG CACCCATCAA CACATCTAGG AGACAGGCTA
  R
  GAAGATGGCA GGAAAGTGCC CTGTACTAAA GGGAAAACAG CAGGCACATG CACACACACC
  ACTACCGCCG TCCAACCCAC AGAGACAAAA ACGTAAAACC TATACAACCT TAATACAGAT
  ATGATATAAT ATAATAAAAT AAATATAATA TATATAATAT AATACATATT TAAACCCTTG
  GCGTGCAAGC AGAAACTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49728788	NES13057566	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31347374					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49728788	NES13057566	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160022248 () rs orientation: forward

Symbol	Name	Function Class
Cpgi916	CpG island 916	225 bp proximal
Mrps14	mitochondrial ribosomal protein S14	537 bp upstream
Rr13519	regulatory region 13519	648 bp distal
Rr28809	regulatory region 28809	within coordinates
Rr372319	regulatory region 372319	within coordinates
Tssr9641	transcription start site region 9641	559 bp upstream