rs31348797 SNP Detail

Summary

• ID
  rs31348797
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123060730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCCAGTTCC TGTTTGTGGG TGGGGCACAC CCAGTTAAGT
  GGGCAAGCCC ACGGAGGTCC TGCAACCCTT TGCTTCCTTG AGGACACCTC AGCTGAGCGT
  Y
  TCGTTTCACA CAGAACCAGG CTGTCGTGGG CCTTCCTTCC TTCTGTGGTT GTGCTGGAAG
  ACGTCATCAA ATTGTCTGTC CACGCGCCAG ATTCCTCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss45525383	mCV25366987	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss135761722	ENSMUSSNP1952438	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss320918502	CHEV_3_122969999	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs31348797					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123060730 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13776	CpG island 13776	within coordinates
Gm56815	predicted gene, 56815	within coordinates
Gm66521	predicted gene, 66521	within coordinates
Rr77168	regulatory region 77168	within coordinates
Sec24d	SEC24 homolog D, COPII coat complex component	374 bp upstream
Tssr31542	transcription start site region 31542	100 bp upstream
Tssr31543	transcription start site region 31543	127 bp upstream
Tssr31544	transcription start site region 31544	364 bp upstream