rs31349212 SNP Detail

Summary

• ID
  rs31349212
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:161349877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCAGTTT TATCCCCAGA
  ATCTATATGG AGAAAGGAGA GAACCAACCC CTATAGGCAC ACATGCATCC ATGCCAGATG
  TATCCACACA TGAGAGGAAT AAATAAAATG TAATAAAACA CTGTCTTGGT CTGTCCTCTT
  TCTCTTCAAC GAGGCGGGCG AGCGGCAGAC GCCAACATGC AGATCTTCGT GAAGACCCTG
  M
  CGGGCAAGAC CATCACTCTT GAGGTCGAGC CCAGTGACAC CATCGAGAAT GTCAAGGCCA
  AGATCCAAGA CAAGGAAGGC ATCCCACCTG ACCAGCAGAG GCTGATATTC GCGGGCAAAC
  AGCTGGAGGA TGGCCGCACC CTGTCCGACT ACAACATCCA GAAAGAGTCC ACCTTGCACC
  TGGTGCTGCG TCTGCGCGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47043733	NES11150180	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31349212					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47043733	NES11150180	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:161349877 () rs orientation: forward

Symbol	Name	Function Class
Gm7331	predicted gene 7331	within coordinates
Reps2	RALBP1 associated Eps domain containing protein 2	within coordinates
Rr8425	regulatory region 8425	within coordinates
Rr9479	regulatory region 9479	1123 bp distal
Tssr162582	transcription start site region 162582	63 bp downstream
Tssr164507	transcription start site region 164507	1264 bp upstream