rs31349416 SNP Detail

Summary

• ID
  rs31349416
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181942866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGTC CCAGAGCACA CACTTCTCCC
  R
  ACCCTTTGGA CATATTTTGA GTATA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45022827	mCV24017135	ABI	CRAMUS_MOUSE	f	SNP		G				A	G
ss49538226	NES12844449	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A				G	A	G		A
ss146402221	ENSMUSSNP5331256	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320162410	CHEV_1_184045432	CHEVERUD	SCREENING_POP	f	SNP								G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31349416					SNP	A	G	A	A	A	A	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49538226	NES12844449	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181942866 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1142	CpG island 1142	1918 bp distal
Gm33725	predicted gene, 33725	within coordinates
Gm39719	predicted gene, 39719	1660 bp downstream
Rr424860	regulatory region 424860	1261 bp distal
Rr424861	regulatory region 424861	760 bp distal
Rr424862	regulatory region 424862	within coordinates
Rr424863	regulatory region 424863	108 bp proximal
Rr424864	regulatory region 424864	492 bp proximal
Rr424865	regulatory region 424865	586 bp proximal