rs31349471 SNP Detail

Summary

• ID
  rs31349471
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:170673144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGGTGAAAGC AGGAGAATCA GGAGTTGAAG GCCATTTTCC ATTACATAGC AACTTTAAAC
  CAGTTCGAAC TAGGTGAGAT CCTATCTCAA AAGGCAAAAA CAGATCTGGT AGTGGTGACA
  TCCTTACTAC TTTAATCCTA GGACTTAGGA GGCAGAGGTG GGTGATCTAT ATGAGCTGCA
  AGCCAACCTG GTAAACAGAG CAAGTTCCAA GACAGCCAAA CAGCTAAAGC TATACAGAGA
  AACCCTGTCT CAAAAACCAA GAGAGAGAAA GAGAGAGACA GAGAGACAGA GACAGAGAGG
  Y
  TAAAACAAAC AAACAAAAGA CAGACACAAA ACCACTTCTG TGGCATTCCT GCCATAGACA
  CTAAAGCTGA CTCCAATCCT GAGGAAACAT CTGGCACTCC AAATGATAAG GTCATTAAAG
  CACGAAGTCA AGAAGGAAGA ATTGTTCCAG AATAAAGAAA ATTAAAGCAG AAAGACAACC
  ACATGCAACA TAACCTGATG CTTTTGCTGG TCTGAATCTA AGGGGAGCTA CATGGGAAAT
  TGCACAATCT AAACCGGGAC TGGGTAGTGC GAGTTTTGGT TTCTTTTAAC CTCAGTTATG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45022662	mCV23198785	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31349471					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170673144 () rs orientation: forward

Symbol	Name	Function Class
Atf6	activating transcription factor 6	Intron
Rr423131	regulatory region 423131	896 bp distal
Rr423132	regulatory region 423132	993 bp distal
Rr423133	regulatory region 423133	within coordinates
Tssr14928	transcription start site region 14928	212 bp downstream