rs31349915 SNP Detail

Summary

• ID
  rs31349915
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:190804591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTTGTAC TTGATTAATT
  TGATTTATAA ATCAAAATTT CAAAATTCTG AAAGAATTAT TGTTTGAATT TCAGGCCTTC
  CTCTGGGTTG ACTTCTTTTT TTTTTTGTTT TGTTTTGTTT TTTCAAGACA GGGTTTCTCT
  GTGTCCTGGC TGTCCTAGAA CTCACTTTGT AGACCAGGCT GGCCTCGAAC TCAGAAATCT
  K
  CCTGCCTCTG CCTCCCAAGT GCTGGGATTA AAGGCGTGCG CCACTGCTAC CGCCACCACC
  ACCACCACCA CCACCTGGCC TGGGTTGACT TCTGTGGGCA CGCCTTAGCT GAGGGCTGTG
  ACAGGCAGCA TGTGACAGGC ACCTTAGCTG AGGGCTTGTT CCGTCTTTGC TCCTGTGAAG
  GCTCCTTCGT AGCAGACTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45022925	mCV23579816	ABI	CRAMUS_MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs31349915					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190804591 () rs orientation: forward

Symbol	Name	Function Class
Nsl1	NSL1, MIS12 kinetochore complex component	Intron
Rr426040	regulatory region 426040	234 bp distal
Rr426041	regulatory region 426041	within coordinates