rs31350628 SNP Detail

Summary

• ID
  rs31350628
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172033754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCT CCTCAGATGC AGTAAACTGG
  K
  TGTGAGAGTA CCCAGACCAG TTGCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45022938	mCV23614956	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T
ss120007344	PARCsnp_1.17750	PARC_SEQ	INBRED	f	SNP			G	T
ss120010243	PARCsnp_1.07389	PARC_SEQ	INBRED	f	SNP			G	T
ss146183819	ENSMUSSNP259383	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320123198	CHEV_1_174136318	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31350628					SNP	T	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172033754 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1038	CpG island 1038	21 bp proximal
Gm17224	predicted gene 17224	840 bp upstream
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr396578	regulatory region 396578	1053 bp upstream
Rr423483	regulatory region 423483	1244 bp distal
Rr423484	regulatory region 423484	711 bp distal
Rr423485	regulatory region 423485	within coordinates
Rr423486	regulatory region 423486	607 bp proximal
Tssr294	transcription start site region 294	441 bp downstream
Tssr295	transcription start site region 295	493 bp downstream
Tssr296	transcription start site region 296	569 bp downstream
Tssr297	transcription start site region 297	600 bp downstream
Tssr15164	transcription start site region 15164	467 bp downstream
Tssr15165	transcription start site region 15165	497 bp downstream
Tssr15166	transcription start site region 15166	588 bp downstream
Tssr15167	transcription start site region 15167	1514 bp downstream