rs31350700 SNP Detail

Summary

• ID
  rs31350700
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45015714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAAAGGCG CGGTGAGGGG
  GAGGAATCCC CACACCACCT GCACCCCCCT CCTCCCTAGC GGCCGTGGAA GGAGATGGGG
  GAGGCGAGGC TACCGAGAGC TGACCATGGA CAGCTCCGGC GCGGGCCTGT GTCCAGGGCG
  AGCCGGCCTG GACCGAGGAA CGTCTCCGGT TGATTCAACC AGAAGGTGGG GGACGCAAAT
  R
  GGGGAACGAT TTGGACGCAA TGGAGGAAGC CCCACAGCGG TGACCAGGGT CTGGAGCTCC
  CAGGACTGGG CCCAGAGGAT GGATCTAGAC TGAGGGATCC CCTGGGCTGA GCTGAGGGAT
  CCAGGCTTCT GGGCCCTGGA GGAGGCACAA GGAGGTAGCC CGCCTGAGAT ACTAGGGTTC
  GGCGGGGCAC TCTCAGCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46023811	mCV25291021	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss149134091	ENSMUSSNP4056135	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31350700					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45015714 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19049	CpG island 19049	within coordinates
Gm45619	predicted gene 45619	1887 bp upstream
Gm71276	predicted gene, 71276	1139 bp upstream
Lin7b	lin-7 homolog B, crumbs cell polarity complex component	1601 bp downstream
Mtag2	metastasis associated gene 2	within coordinates
Ppfia3	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3	within coordinates
Rr400310	regulatory region 400310	653 bp upstream
Rr646419	regulatory region 646419	273 bp distal
Rr646420	regulatory region 646420	within coordinates
Rr646421	regulatory region 646421	414 bp proximal
Rr646422	regulatory region 646422	1397 bp proximal
Tssr72376	transcription start site region 72376	478 bp downstream