rs31351608 SNP Detail

Summary

• ID
  rs31351608
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:161351358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCATTGGA AAGTTCTAAG
  GTGTGTATAG AAATAGTTTA ATGATATATA AAGTTAAGAA AGTTACTTAA AAAGTTACTC
  CAGCTACTCG ATTAGCAGGC AGTATTTCAT AAGCTACCTC CTTTGCCCTC TTCTTCAGCT
  TACCCCAAAC ACACACCACA CTCTGCTGGG TCTGTCTTCG ATTACATACT GTGCAGATTT
  M
  CAGTATAGAA TGCAAACCTT TGGACTAGGG TTTGTTTTCT CAGGTGGAAA GCAAGACATG
  GCAAAAAGGA ATGGATAGAA TCAACTTCCT CACAACTTCC AGATGCACAC TAAACTGGAT
  GTTGGATGCT ACAAATCAGA AAATTTTACT GGCCATTTGG GAGGAATACA GACACAGTTC
  CAGGAGTTTG AAGGCCACTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47043760	NES11150139	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31351608					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47043760	NES11150139	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:161351358 () rs orientation: forward

Symbol	Name	Function Class
Gm7331	predicted gene 7331	1119 bp downstream
Reps2	RALBP1 associated Eps domain containing protein 2	within coordinates
Rr8425	regulatory region 8425	1357 bp distal
Tssr162582	transcription start site region 162582	1544 bp downstream