rs31351921 SNP Detail

Summary

• ID
  rs31351921
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:7236572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAGT TTTAAGCAGA TACATGCTAC
  W
  CATGAAGAAA GTTGAAAAAC TAACA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss45777899	mCV24857519	ABI	CRAMUS_MOUSE	f	SNP		A	T					A	T
ss47543541	NES10315076	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	A	A	T		T	A	A		A		T
ss147805327	ENSMUSSNP2431112	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T						T
ss321457761	CHEV_5_7186572	CHEVERUD	SCREENING_POP	f	SNP												T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs31351921					SNP	A	A	T	A	A	A	T	A	T	A	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47543541	NES10315076	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:7236572 () rs orientation: forward

Symbol	Name	Function Class
Gm72407	predicted gene, 72407	within coordinates
Tssr50074	transcription start site region 50074	144 bp upstream
Zfp804b	zinc finger protein 804B	within coordinates