rs31351995 SNP Detail

Summary

• ID
  rs31351995
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135800253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATCCCAC ACAAGCCAAA
  CAGGGAAGGA TGCTGCAGAC TCACAGTGCC AGAGCACACC GGGTAGATGG CTTAGGACAC
  CTCTCAGGAA CAATGTCCTC ACGTAGCTGA CCTCCTCAAT CCTCAATGGA CAGATCGTTT
  ACTAGGCCAC CCTGAGCCAT AGAGGAATTT TTCGGTCTTA CTGCTGGGGT AAGAAGAGGG
  K
  TGGGCCAAGG AGCATTCTAT ACCCTCCTTG AGAGAGGTAT GGCCCTTATC ATTCATGTCT
  ACCCAGCACT AACCACACCA GTGGAGAAGC AATAGCCTAG ACATGAAGGC TCTGGGGGAA
  GGCTCAGCTC TGTCCATCAG TCATTTGTCC TAGGGGGCTT CACATAGACA GGCTCACTCA
  TGGGGTTCTC AGATGTTCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45023390	mCV23238871	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	T
ss145548860	ENSMUSSNP7044580	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31351995					SNP	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135800253 () rs orientation: forward

Symbol	Name	Function Class
Pkp1	plakophilin 1	within coordinates
Rr372095	regulatory region 372095	860 bp upstream
Tssr13903	transcription start site region 13903	626 bp upstream