rs31353379 SNP Detail

Summary

• ID
  rs31353379
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134483321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTTGAGCT GCTGAGTCAG CAGAGATTCT
  GGGAGTGGCG AGGGGCAGGG TTTGGGACTA TACGTAGCTC TGCTGTAGTT CCAGTCTAGG
  AGAGGCCTTC CCCTCCTCCC CTCCCTTGTA TGTGTACCTC AGAAATGTGT AGGGGTGAGG
  Y
  GGTGGTGGTG TTTAGTTAAA AGATGCTTCC CCAAGACCAG ACCTGCTTTC CAAGGTCAGA
  GCCCATAATG AAACCCTTTA TCATGGTGTC AGCCGGGGGT GGGGACCAAG AGAGTACAGC
  TATCCCACAG GGAAGGCCTT GCAGCCGAGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss45023064	mCV23638947	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss145508260	ENSMUSSNP4300765	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss319983148	CHEV_1_136452160	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs31353379					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134483321 () rs orientation: forward

Symbol	Name	Function Class
Cpgi772	CpG island 772	590 bp proximal
Gm57134	predicted gene, 57134	533 bp downstream
Rr367005	regulatory region 367005	1377 bp upstream
Rr418945	regulatory region 418945	within coordinates
Rr418946	regulatory region 418946	387 bp proximal
Rr418947	regulatory region 418947	830 bp proximal
Rr418948	regulatory region 418948	1509 bp proximal
Tssr13798	transcription start site region 13798	1404 bp downstream