rs31354580 SNP Detail

Summary

• ID
  rs31354580
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:7235760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAATGCTT CAAAATAAAA
  TTTGCTTATA ATAATGCAAT TTGGAAGGCA GTGTATGAAT AACTATATCC CACTTTTTTG
  AAATGCCTTT TAAAATTCTA AGCTTAGAAA GTGACAAGCC GACTATATTT GTCAGGGTTC
  AAAAACTATA ATATAATATA ATCACTGTGA TAAGCAAATG CTCAAACTGG CACTTGCCCT
  S
  GAGGGATCTT TTGATAGCTG TTGACCTAGA TTCTGGGATA TAATGACCAA CGTGCTTAAG
  GGAAGGGATA TGAAGAAAAA TCTGGAACCT CAGCAAACAG ATGAAATTTT AAACCATCAT
  TAAAAGCCCA ATGAACTGCA AAATGAGAAA CACCCACATA CAAACAAAGT AGGTTAAAAA
  TAATCTGGTA AAGATGACAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47543571	NES10315062	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31354580					SNP	C	C	C	C	C	C	G	C	C	C	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47543571	NES10315062	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:7235760 () rs orientation: forward

Symbol	Name	Function Class
Gm72407	predicted gene, 72407	within coordinates
Tssr50074	transcription start site region 50074	662 bp downstream
Zfp804b	zinc finger protein 804B	within coordinates