rs31354583 SNP Detail

Summary

• ID
  rs31354583
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:7235724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTGTAAT TTATTTCAAG
  AAGGTCATAA ATAATAAATA ATGCTTCAAA ATAAAATTTG CTTATAATAA TGCAATTTGG
  AAGGCAGTGT ATGAATAACT ATATCCCACT TTTTTGAAAT GCCTTTTAAA ATTCTAAGCT
  TAGAAAGTGA CAAGCCGACT ATATTTGTCA GGGTTCAAAA ACTATAATAT AATATAATCA
  Y
  TGTGATAAGC AAATGCTCAA ACTGGCACTT GCCCTCGAGG GATCTTTTGA TAGCTGTTGA
  CCTAGATTCT GGGATATAAT GACCAACGTG CTTAAGGGAA GGGATATGAA GAAAAATCTG
  GAACCTCAGC AAACAGATGA AATTTTAAAC CATCATTAAA AGCCCAATGA ACTGCAAAAT
  GAGAAACACC CACATACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47543574	NES10315061	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31354583					SNP	C	C	C	C	C	C	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47543574	NES10315061	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:7235724 () rs orientation: forward

Symbol	Name	Function Class
Gm72407	predicted gene, 72407	within coordinates
Tssr50074	transcription start site region 50074	698 bp downstream
Zfp804b	zinc finger protein 804B	within coordinates