rs31354787 SNP Detail

Summary

• ID
  rs31354787
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:46811670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAAGGAGACT GTCAGATATA AAGAAGCGGT CTCTCACTGA TACAGAGCTT TGGAGAGAGC
  AAGACCTGTT TATAAAAATA GAGACTAAGC TTATGGTGGG AACTTGCTGT CACATGGCCA
  TTTTGAAGTT ATGGTGGTGC CTTTCTGCTG TGCAGGAATT TGGTTGCTTT ACTTTCATAG
  GCCCCGTGAA CTTTACATGT TTGAAATCAA ATGCAGAAAG AATGGGGCTA AATAACCCAT
  TAGGGAAAGC CATGGTTATA AATGGAGCAC AAAGGATAAA ATGTGACCCG CCAAGGAACA
  Y
  AACTGAGAAA TAGTACCGAA GGGAAGGCGT GAAGACTAGT TTAAAAAGTT GTTTCTCGTG
  CGAAACAGTG ACTACACGCT CTTCGTTAAA ATCCAAAAGA TCCATTTGTG TGAGTGAACT
  ACATCAAGAA AAGTCTCAGG GCCAGCAAGG TGATTGAGCA AGTAAAGACA CTGCACCAAG
  CCCAATGACA AGAGCTAGGT CCTAGGGGCC ATGTGGTAAG AGAAAAGAAC TGACTCCCGA
  AAGCTGCGCC CTGCCCTCCA CACACGTGCG GTGGCATGTG TGCACCCACA TGCACGCATA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39281171	mCV25349250	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31354787					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:46811670 () rs orientation: forward

Symbol	Name	Function Class
Gm49319	predicted gene, 49319	within coordinates
Rr491231	regulatory region 491231	944 bp distal
Rr491232	regulatory region 491232	251 bp distal
Rr491233	regulatory region 491233	1198 bp proximal
Rr491234	regulatory region 491234	1624 bp proximal
Rubie	RNA upstream of Bmp4 expressed in inner ear	within coordinates
Tssr128285	transcription start site region 128285	1636 bp downstream