rs31355406 SNP Detail

Summary

• ID
  rs31355406
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:7235697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTTGGAAG GCAGTGTATG AATAACTATA TCCCACTTTT
  TTGAAATGCC TTTTAAAATT CTAAGCTTAG AAAGTGACAA GCCGACTATA TTTGTCAGGG
  K
  TCAAAAACTA TAATATAATA TAATCACTGT GATAAGCAAA TGCTCAAACT GGCACTTGCC
  CTCGAGGGAT CTTTTGATAG CTGTTGACCT AGATTCTGG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45751846	mCV24857499	ABI	CRAMUS_MOUSE	f	SNP	T	G					T		G
ss47543577	NES10315060	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	G		G	G	T	T		G	G	T	G		G
ss147805306	ENSMUSSNP4936409	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss321457756	CHEV_5_7185697	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31355406					SNP	T	G	T	T	T	G	T	G	G	T	T	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47543577	NES10315060	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:7235697 () rs orientation: forward

Symbol	Name	Function Class
Gm72407	predicted gene, 72407	within coordinates
Tssr50074	transcription start site region 50074	725 bp downstream
Zfp804b	zinc finger protein 804B	within coordinates