rs31355412 SNP Detail

Summary

• ID
  rs31355412
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:7235254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATCGATAT ATAATTACTG
  AGTTTTTCTG TTTAGCACAT TTAAGCTTAT AATTGAGTAA TTCATTGTAA TGCTCAGTTC
  AAAATAAAAT ATTTCTAATT TTGTAAAAGA TCTAATTTCA TATTAGGCTG ATCAATGGAA
  GCAGTACTAT TATTTCAATG ATGCCCTAAT GAAAAGTTTG GTTTTCCATT CAGTTTCTTC
  W
  CTTTAAAGAT CATCATCAAG GTGTTCTATC CCTTTTCTAC ATCATTATGT CCCATAAATA
  ATGCCTTTGA TTAATGACTT ACTATTATAT GATAGTCATT ACAGTTAAAA TTAGAATTGT
  CCATGTAATT ACTATTCCTG TCATTTTATA AGGGTATTTT TAGTGAATAC CTCAAAGATT
  TCTAATACTT AAGTTATATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47543583	NES10315058	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31355412					SNP	T	T	T	T	T	T	A	T	T	T	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47543583	NES10315058	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:7235254 () rs orientation: forward

Symbol	Name	Function Class
Gm72407	predicted gene, 72407	within coordinates
Tssr50074	transcription start site region 50074	1168 bp downstream
Zfp804b	zinc finger protein 804B	within coordinates