rs31356305 SNP Detail

Summary

• ID
  rs31356305
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:7235212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTGGTGA CTGATGCTTT
  TTCTTAACAT TTTACAGCTG AAATATCGAT ATATAATTAC TGAGTTTTTC TGTTTAGCAC
  ATTTAAGCTT ATAATTGAGT AATTCATTGT AATGCTCAGT TCAAAATAAA ATATTTCTAA
  TTTTGTAAAA GATCTAATTT CATATTAGGC TGATCAATGG AAGCAGTACT ATTATTTCAA
  Y
  GATGCCCTAA TGAAAAGTTT GGTTTTCCAT TCAGTTTCTT CTCTTTAAAG ATCATCATCA
  AGGTGTTCTA TCCCTTTTCT ACATCATTAT GTCCCATAAA TAATGCCTTT GATTAATGAC
  TTACTATTAT ATGATAGTCA TTACAGTTAA AATTAGAATT GTCCATGTAA TTACTATTCC
  TGTCATTTTA TAAGGGTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47543586	NES10315057	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31356305					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47543586	NES10315057	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:7235212 () rs orientation: forward

Symbol	Name	Function Class
Gm72407	predicted gene, 72407	within coordinates
Tssr50074	transcription start site region 50074	1210 bp downstream
Zfp804b	zinc finger protein 804B	within coordinates