rs31356536 SNP Detail

Summary

• ID
  rs31356536
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:161348750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTACTCACT ATGTTTCAGA
  ACTGATTATT CCTCCTCTTT TGAAGACAAA AATAAAGATG ACAAACGCTG GCTGTTCCTC
  TTCTTATAAA AGAGAATGGA TGACTTTTCA AGGTTCAAGT GTACAAAGTC TAAAAGATCA
  GATTAGTCAT TACCACTGCT TAGGTGTTAT CCCGGTTTGC CAAAACTGAA TGGGAACTGG
  K
  CAAGAGCTAG GGATAAGACT CAGTGGTAGC ATACTTACCT ACCATGCACA ACGCCCTACA
  TTTAACCCCA GTACTACGAA AATATAGTTA ACAAGTCAAG TCACTTCTTA GTAAATTATA
  CCTCAGGTGC CCATTGCAGA GAAACAAAAA AGCACTATGC ACATAAATAC GTAATAGTAC
  AATAACTGAT GGTCCCGTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47043709	NES11150245	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31356536					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47043709	NES11150245	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:161348750 () rs orientation: forward

Symbol	Name	Function Class
Gm7331	predicted gene 7331	1103 bp upstream
Reps2	RALBP1 associated Eps domain containing protein 2	within coordinates
Rr8425	regulatory region 8425	1051 bp proximal
Rr9479	regulatory region 9479	within coordinates
Tssr162582	transcription start site region 162582	1055 bp upstream
Tssr164507	transcription start site region 164507	137 bp upstream