rs31356538 SNP Detail

Summary

• ID
  rs31356538
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:161348871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAAAGTCT AAAAGATCAG
  ATTAGTCATT ACCACTGCTT AGGTGTTATC CCGGTTTGCC AAAACTGAAT GGGAACTGGT
  CAAGAGCTAG GGATAAGACT CAGTGGTAGC ATACTTACCT ACCATGCACA ACGCCCTACA
  TTTAACCCCA GTACTACGAA AATATAGTTA ACAAGTCAAG TCACTTCTTA GTAAATTATA
  S
  CTCAGGTGCC CATTGCAGAG AAACAAAAAA GCACTATGCA CATAAATACG TAATAGTACA
  ATAACTGATG GTCCCGTTCT GCCCCCTATA ATGAGAGTAT CTTCCTTCAC ACCTAGACTG
  AATTCAACTA TTTCTTTTCT ACAGATCCTT CTTAAACTCT TGGGTAGAAT AGTTTATTTT
  CCCCAGTGCA TTCTGAAAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47043712	NES11150205	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31356538					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47043712	NES11150205	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:161348871 () rs orientation: forward

Symbol	Name	Function Class
Gm7331	predicted gene 7331	982 bp upstream
Reps2	RALBP1 associated Eps domain containing protein 2	within coordinates
Rr8425	regulatory region 8425	930 bp proximal
Rr9479	regulatory region 9479	117 bp distal
Tssr162582	transcription start site region 162582	934 bp upstream
Tssr164507	transcription start site region 164507	258 bp upstream