rs31357279 SNP Detail

Summary

• ID
  rs31357279
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178233377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGATCCC GGGGAAAGGC
  TGGGCTTCCT CCTGCACTGG CCCATGTCCG TTTTCGCTCC AGTTCCGTGA CTGGCAGAGT
  GGCTCCGCTC AGGAGAGGGT GACGCCAGAG AGCCACAAGG CCTGGCTCGG GTGGGGTTGG
  GGTGGGCGGA CGCTTTTCGG GGAGGGACCG TGTAAGGGGC CGCCAGGTCT GCGCCCGGTT
  S
  TGGGGCGCAC CTGAGACGGC CGGGAAAAAA AAAAGCTGAA TAAAATAAGT AATTAAAGAA
  ATGAATAAAG AAATAAGCAA GGCACACTAC GTCCTTGACA GTCACAATCA GGCCCAGGCG
  GGTTCCGGAG CCTTGTTAAT AAATGACGCC CCTAGGCCCA AAGAACGCGG GCCTCGGTTC
  TGGTGGGGGC GGGGATCGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45023358	mCV22364005	ABI	CRAMUS_MOUSE	f	SNP	C	G	C	C
ss146355580	ENSMUSSNP2182905	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31357279					SNP	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178233377 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1092	CpG island 1092	within coordinates
Efcab2	EF-hand calcium binding domain 2	273 bp upstream
Gm70920	predicted gene, 70920	98 bp downstream
Gm70923	predicted gene, 70923	677 bp upstream
Rr29069	regulatory region 29069	within coordinates
Rr372517	regulatory region 372517	within coordinates
Tssr10392	transcription start site region 10392	205 bp upstream
Tssr10393	transcription start site region 10393	219 bp upstream
Tssr10394	transcription start site region 10394	226 bp upstream
Tssr10395	transcription start site region 10395	240 bp upstream
Tssr10396	transcription start site region 10396	260 bp upstream
Tssr10397	transcription start site region 10397	683 bp upstream
Tssr15493	transcription start site region 15493	603 bp downstream