rs31358087 SNP Detail

Summary

• ID
  rs31358087
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151247647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCC TGCAGCTTTA GATCTGCAGG
  W
  CTGGCCCCTT GATAAGCTCC AGCAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45023619	mCV23129935	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T	A
ss145718948	ENSMUSSNP1989590	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		A
ss320055961	CHEV_1_153219026	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31358087					SNP	A	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151247647 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr420285	regulatory region 420285			within coordinates
Swt1	SWT1 RNA endoribonuclease homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant