rs31358103 SNP Detail

Summary

• ID
  rs31358103
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:96082495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCACACT TCACTGCCTT
  CACCCCAGTT TGGATGCTAG GCAAGCATAC ATTTCTTTCT TTCAACTTCT TTATTTACAT
  ATTTTTTCCA CCTTTCAATT GGGATAAAAT AAGTAAAAAT TTTATGCCAA TAATTGGTCA
  ATGCAGGTAT TTGTAAAGAC TCAGTCAGAA AAACATCTTA CTTTATGATT GGTAGCTATC
  R
  ACACTGTATT TGTACAATAG AGACTTAAAA TAAATTATAA TCTTTTATAT GAGCAAAATT
  ATAAGGTATA ATAATAATAC ATAACAACTA AAAATTACAT GAAAGTAGAG AGTAATATAA
  CACAGATTTT AACATATGTT GACCACAACA AGAAAAGCAT GTTTTAATGC TACATTGACG
  TTACTACTTT GAAAGAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45023375	mCV23090447	ABI	CRAMUS_MOUSE	f	SNP		G	A					A	G
ss49442677	NES12831138	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	A	A		G	A	G		G	A		G
ss144978465	ENSMUSSNP6179225	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss319850681	CHEV_1_98051347	CHEVERUD	SCREENING_POP	f	SNP												A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31358103					SNP	G	G	A	G	A	A	A	A	G	A	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49442677	NES12831138	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:96082495 () rs orientation: forward

Symbol	Name	Function Class
Gm69977	predicted gene, 69977	1230 bp downstream
Rr371742	regulatory region 371742	1534 bp upstream