rs31359978 SNP Detail

Summary

• ID
  rs31359978
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172331560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCC TTTCTGCTGT AACAAACTAT
  R
  AACTTAGCCA CACACTGGAT GCTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss45023644	mCV22750466	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss120011634	PARCsnp_1.19895	PARC_SEQ	INBRED	f	SNP	A	G
ss120014572	PARCsnp_1.09941	PARC_SEQ	INBRED	f	SNP	A	G
ss320125767	CHEV_1_174434124	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs31359978					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172331560 () rs orientation: forward

Symbol	Name	Function Class
Rr29013	regulatory region 29013	within coordinates
Rr29014	regulatory region 29014	240 bp proximal
Tagln2	transgelin 2	within coordinates
Tssr10218	transcription start site region 10218	1401 bp downstream
Tssr10219	transcription start site region 10219	1270 bp upstream
Tssr10220	transcription start site region 10220	1758 bp upstream
Tssr10221	transcription start site region 10221	1800 bp upstream
Tssr10222	transcription start site region 10222	1886 bp upstream