rs31362506 SNP Detail

Summary

• ID
  rs31362506
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:163187415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTTTATGA ACAGATCTCA TAGCAGGAGT GTTTCTGAGG
  GTGTTAGGCT CAAAGGAAAG GTCTATGTGA AGTATACTAT GTACCTTTAA AAATCAACTT
  Y
  CATCAAACAG TTTAAACATT TCTTTCCCAC AATTTAGAAA ACATTTCAGA AGTCATTAAA
  AATCCATTTA AAAACATCAA CCATGTGTTG TTCTCCATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45154714	mCV23470613	ABI	CRAMUS_MOUSE	f	SNP	C	C							T
ss49730843	NES13050353	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	T	C	C	T	C	C	T	C
ss145957054	ENSMUSSNP1630355	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31362506					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49730843	NES13050353	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:163187415 () rs orientation: forward

Symbol	Name	Function Class
Rr696	regulatory region 696	1108 bp proximal
Rr846	regulatory region 846	within coordinates
Rr407134	regulatory region 407134	1593 bp proximal
Rr422080	regulatory region 422080	1317 bp distal
Rr422081	regulatory region 422081	1494 bp proximal
Tssr9725	transcription start site region 9725	1459 bp downstream