rs31362509 SNP Detail

Summary

• ID
  rs31362509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:163186461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTCTAAAT GTTGAGGTTT TGACAACTAG GCTTTCAAAA
  GTTGATTTTA CCCAGCAAAT GTTCTGAGAA TTTCATAGTG GAGGAGGGCC GAGGGAACAG
  Y
  ACCCCTATGC TGTAGAAATG CCCTGTCCTA CATCTTGGCG CTTTGTGTAG TTTAACCACT
  ACACCAATGT ATTTATTTTT GTTCTTAACG GAGAAATAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49730846	NES13050389	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	C	T	T	T	T	C	T
ss145957038	ENSMUSSNP5687912	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31362509					SNP	T	T	T	T	T	T	C	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49730846	NES13050389	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:163186461 () rs orientation: forward

Symbol	Name	Function Class
Rr846	regulatory region 846	within coordinates
Rr422080	regulatory region 422080	363 bp distal
Tssr9725	transcription start site region 9725	505 bp downstream