rs31362513 SNP Detail

Summary

• ID
  rs31362513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:163185602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTTTAGC CCTCACGGAT
  GAACTACTGA AAAGCCGTCT CCCTGAGTCT CCTCATGTAA TTGCTCCTGT GTTCTGAGGG
  AGCTATAACT TGCAGAAGCC GATGGGCAGA TAAGCTTGCC CAACATGCGC TTAATTATAC
  AAACAAGTCT TTCTGGAGAA AGTCTTCAGA CAATTACCTC CCGAAATAAA TATACCCCAG
  Y
  GACTGTCAAT AGCAATAAAA CCCACACAAT CATTTCTTAA AGCTTTTATT GTTTGCCTGT
  AATTAGCATG TTGATGTGAT TAAAGCTACA TTTGACTTCT GATAAACCCC AGACTCCTAT
  AGATAACATT TCCAGTGGTT CAAAGCTGCT TTCATTAGAA GCGATATTTA TCTGATTTGT
  AACCAATCAA TTGGAAATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49730850	NES13050430	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31362513					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49730850	NES13050430	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:163185602 () rs orientation: forward

Symbol	Name	Function Class
Rr846	regulatory region 846	within coordinates
Rr422079	regulatory region 422079	1449 bp distal
Rr422080	regulatory region 422080	135 bp proximal
Tssr9725	transcription start site region 9725	349 bp upstream