rs31363049 SNP Detail

Summary

• ID
  rs31363049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70705786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CCTTGCTCTC TGGGCTAATC CCCTGGGGAG TTCCTGATGA ATTCCCCGCC
  Y
  CCCCCCCAGC TCCCTGTGTT TTCATCTTGT TCTTGCTGTT GTCTGGATCA           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39281611	mCV24332302	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss139684691	ENSMUSSNP5971132	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31363049					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70705786 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6694	CpG island 6694	1061 bp distal
Phyhip	phytanoyl-CoA hydroxylase interacting protein	within coordinates
Rr290302	regulatory region 290302	786 bp distal
Rr290303	regulatory region 290303	1615 bp proximal
Rr404191	regulatory region 404191	1969 bp upstream
Tssr4470	transcription start site region 4470	1725 bp downstream
Tssr126423	transcription start site region 126423	1879 bp downstream
Tssr126424	transcription start site region 126424	1805 bp downstream
Tssr126425	transcription start site region 126425	1749 bp downstream
Tssr126426	transcription start site region 126426	1613 bp downstream
Tssr126427	transcription start site region 126427	1498 bp downstream
Tssr126428	transcription start site region 126428	1486 bp downstream
Tssr126429	transcription start site region 126429	727 bp downstream
Tssr126430	transcription start site region 126430	659 bp downstream
Tssr126431	transcription start site region 126431	501 bp downstream
Tssr126432	transcription start site region 126432	463 bp downstream