rs31363677 SNP Detail

Summary

• ID
  rs31363677
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:163185295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGTATCC CGGTTTTCTA
  TTTTGTCTCC TCTTCATATA CATTTTCAGA TTTGGGTTGT GCAACCCTGT TAAATGATCT
  TGTATACACC AAGAAGAAAA TTCCCTCCTC TCCCACTCCC CGATGGTGTC CACTGAAATG
  AAACTGTTTG AGCTGGTTTA GATTTTTTCC ATATTCTTAC ATTACTGACC ATGGAACGTT
  M
  TATTTACCTT TATTGCTTTA TTAGTTAACT TCTGGCAACT AACCTGATTT CTCATTCTAA
  TACATTCTGT GCTTTCAGAG AACATTAGCA CTTTTAATTT AATTTAACTT TTTAGCCCTC
  ACGGATGAAC TACTGAAAAG CCGTCTCCCT GAGTCTCCTC ATGTAATTGC TCCTGTGTTC
  TGAGGGAGCT ATAACTTGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49730855	NES13050415	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31363677					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49730855	NES13050415	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:163185295 () rs orientation: forward

Symbol	Name	Function Class
Rr846	regulatory region 846	within coordinates
Rr422079	regulatory region 422079	1142 bp distal
Rr422080	regulatory region 422080	442 bp proximal
Tssr9725	transcription start site region 9725	656 bp upstream