rs31364350 SNP Detail

Summary

• ID
  rs31364350
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:48529768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAGTGAA CACTGCCAAG
  GACAGCATTG AGCTAACATC TAAATGCTTC CAGGAGATCT GTCAGGAACA GCATTTGGAG
  GCCCAGTAGG TTAAAGGGCT GACATTTTAA AATGTTATCT TACAAAGAAA TCCAGTATCA
  AATTATGACC TTTGTGAATT CCAATGGTTC ATGTAAATAA CATATACATA ATTTTTTAAG
  Y
  ACAGAAAAAA CCCCAAAGCT TTTTCCATAT ATATTAAATT TATATTAAAC TTTTGAAACA
  AAAAGGTTAC TTTAACCCTG GACAACCCTA TTCCTCTTCA AAAATTAAAA TTTCCTTCTG
  GATTTCTGTA AAAGTTAACC AAAAGGATAC AGCATTCGTG ACTATCAAAC GAAAAATTTA
  AGAAAACTTA TTAACGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	MSM/Ms
ss46024454	mCV24996013	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss149208202	ENSMUSSNP6366191	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	MSM/Ms
rs31364350					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48529768 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19137	CpG island 19137	463 bp proximal
E2f8	E2F transcription factor 8	Intron
Gm2788	predicted gene 2788	within coordinates
Rr400335	regulatory region 400335	926 bp upstream
Rr400336	regulatory region 400336	1629 bp upstream
Rr646935	regulatory region 646935	640 bp distal
Rr646936	regulatory region 646936	133 bp distal
Rr646937	regulatory region 646937	394 bp proximal
Rr646938	regulatory region 646938	1011 bp proximal
Rr646939	regulatory region 646939	1365 bp proximal
Rr646940	regulatory region 646940	1566 bp proximal
Tssr66768	transcription start site region 66768	1312 bp upstream
Tssr66769	transcription start site region 66769	1844 bp upstream
Tssr72628	transcription start site region 72628	1926 bp upstream
Tssr72629	transcription start site region 72629	1868 bp upstream
Tssr72630	transcription start site region 72630	959 bp downstream
Tssr72631	transcription start site region 72631	972 bp downstream
Tssr72632	transcription start site region 72632	1012 bp downstream
Tssr72633	transcription start site region 72633	1584 bp downstream
Tssr72634	transcription start site region 72634	1621 bp downstream