rs31364631 SNP Detail

Summary

• ID
  rs31364631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:57909431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAGAAAT AAGTGTGCAT
  GCTGAACAGA GGGGAAAGGC ATTAAGATTG GAGAGTCCTC TAAGGAAATG ACACATGCAC
  TTTGAAAAGG ATGGGTCATG AGGCAGAGCA AAGACCCTCA ACCAAAAAGG GTAGCAAATG
  TGGGTGCTTG ACTGGGAAAG CCACTGACCA AATTTTCCAG AAGAGGCTAC TTGCTCAGTG
  Y
  CATTCATTTA ATGAGCAAAT TCACTCTGCA TCCAACGCCC CCACCCCACC CCACCACTCA
  GAATTATGTG TGAGTGATGA AATACATAAG CTTGCTTAGT CAGTCCTCTA CACAAAGTTA
  ATGGCAATGT CAAAGAAAGC AAATGGTTTT GCTTTTAGAA GCTATGATTC CTGAAAAGAA
  ATCCGTAGCA ATGCATGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47545631	NES11456691	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs31364631					SNP	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47545631	NES11456691	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:57909431 () rs orientation: forward

Symbol	Name	Function Class
Rr663749	regulatory region 663749	749 bp proximal
Scrg1	scrapie responsive gene 1	within coordinates
Tssr77422	transcription start site region 77422	493 bp downstream
Tssr77423	transcription start site region 77423	400 bp downstream
Tssr77424	transcription start site region 77424	379 bp downstream
Tssr77425	transcription start site region 77425	361 bp downstream
Tssr77426	transcription start site region 77426	313 bp downstream