rs31365517 SNP Detail

Summary

• ID
  rs31365517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:57909929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTTAAAA ATACCCCTTT
  TAAAACTCGC TTACTTGCAC TGTTTATGAA AAGCGCTCCC CACGGTTGGT CTTTTCTCCT
  CTAAAGAGTT ATTGTTTGTG GTCAGAAAAA AATTAGAACG ATGCAAGATT ATCAGTATTA
  CCTCACAGCA TGCTGTACGA TGTCGGAAAG CAGACCTTCA GTGACCATGT CAGCTGCTTC
  Y
  CCAAGGGTAC AGGTATCCCG AGGGCTTAGG CTGTCACGTG TGTTATCTGT TTTCTATGCC
  ATTTCTGTTC CTTGACATAT GCCTTGAGAT AGTTTATTTC AGAACTTGGC TGCCCTAGCA
  CACCCCCCTC TAAGACAGTT GATAAGAAAA GCAGGGGATT AAAATAATAA CCAGTTGTCT
  TTCAATGCCC ACATGAGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47545637	NES11456695	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31365517					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47545637	NES11456695	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:57909929 () rs orientation: forward

Symbol	Name	Function Class
Rr663749	regulatory region 663749	251 bp proximal
Scrg1	scrapie responsive gene 1	within coordinates
Tssr77422	transcription start site region 77422	991 bp downstream
Tssr77423	transcription start site region 77423	898 bp downstream
Tssr77424	transcription start site region 77424	877 bp downstream
Tssr77425	transcription start site region 77425	859 bp downstream
Tssr77426	transcription start site region 77426	811 bp downstream