rs31365520 SNP Detail

Summary

• ID
  rs31365520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:57909966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTAT CCCGAGGGCT TAGGCTGTCA
  Y
  GTGTGTTATC TGTTTTCTAT GCCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47545640	NES11456697	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T	T	T	T		T	T	C		C
ss144931863	ENSMUSSNP4242990	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T					T
ss322670111	CHEV_8_59935729	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31365520					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47545640	NES11456697	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:57909966 () rs orientation: forward

Symbol	Name	Function Class
Rr663749	regulatory region 663749	214 bp proximal
Scrg1	scrapie responsive gene 1	within coordinates
Tssr77422	transcription start site region 77422	1028 bp downstream
Tssr77423	transcription start site region 77423	935 bp downstream
Tssr77424	transcription start site region 77424	914 bp downstream
Tssr77425	transcription start site region 77425	896 bp downstream
Tssr77426	transcription start site region 77426	848 bp downstream