rs31365572 SNP Detail

Summary

• ID
  rs31365572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:161560260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAAGTTATT TATTTGTAAA
  GCTGTTTACC ATACCATTTC ACTTATGTGA AATTGTTGCT TTTAGTTTTT TCTGTAGCCA
  AGGCCTCACT CACAGAGATA TGTGTGCTCT GAGATATGTG TGACACCCCC CCCCCATCTT
  GGTTTGTTTA TCTCAGTTTT TTTAAAACTG ATAAAGCTGT ACTACAAGGT TTGTTAGGCA
  Y
  AGTGCCTTGT AGAAAACAAG ATCCCACCCT TTTACATTTT TGGGGAAAGT TTCATTGGCC
  TATGCTGCAA GTCTGGACCT TAAAGTATTT ATTTTTGCAA CCCTGTTATA TTGTGCCTTG
  GGAATATTGA GAAAAGGCTA CTGTGAAAGA CAGCTAGAGA AGAACCAGGA AGACTCCTCT
  GTCAGGCATA TGAAAGAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47044693	NES11158485	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31365572					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47044693	NES11158485	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:161560260 () rs orientation: forward

Symbol	Name	Function Class
Rbbp7	retinoblastoma binding protein 7, chromatin remodeling factor	within coordinates
Txlng	taxilin gamma	1655 bp downstream