rs31367417 SNP Detail

Summary

• ID
  rs31367417
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18999454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTATCTCTA CCACCTCTCC
  ACCCCCACCT CAGGTCAGAT AAGAAGGGCG GAGTGTGAGG GCAGATCCCA GGGCCCTGGA
  ATTGCCTCCC CTGAGGCCAC ATTTATTGGC CACCTGGTCC ATCTGGTTCC CCAGGGCCCA
  AACAGCCATT TGGCACAAAT TCCTGGCTGC ACTGTCACAC CCTGTGGCTG GGGATGGAGA
  S
  ACAGAGGTGG CCCAGACAGA CTGCCCTGCC ACCAGGGAGC AGCTGGTCCA GCCTTGGGGG
  GGGGGGGCAG TGCCGAGGAG GCCACTGGCT GATGTAGGAA AACAACAGCT CAAATATAGA
  GTCAGATACC ACAGACCTTG GTTCAAATTC TCCACCAAAC CCTTCTTCCA CATGACCAGA
  GAGCTCCTCA TGTCTCTCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46024988	mCV25048924	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	C	C
ss148471814	ENSMUSSNP1021272	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31367417					SNP	G	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18999454 () rs orientation: forward

Symbol	Name	Function Class
Rr167144	regulatory region 167144	within coordinates
Rr167145	regulatory region 167145	546 bp proximal
Tssr64812	transcription start site region 64812	767 bp upstream
Tssr70883	transcription start site region 70883	1046 bp upstream
Tssr70884	transcription start site region 70884	701 bp upstream
Tssr70885	transcription start site region 70885	460 bp downstream
Tssr70886	transcription start site region 70886	1013 bp downstream
Vasp	vasodilator-stimulated phosphoprotein	within coordinates