rs31367648 SNP Detail

Summary

• ID
  rs31367648
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180234095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTC TGTGGGTGTT TAGGGAGCCA
  Y
  GGTGGCACTC CACGGCGGCA GGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45024094	mCV23631002	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss46717159	NES10686954	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C		C	T	T	T		C	C	T	T		T
ss146380451	ENSMUSSNP5077688	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
ss320159861	CHEV_1_182336661	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31367648					SNP	C	C	C	C	C	T	C	C	C	T	T	T	C	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46717159	NES10686954	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180234095 () rs orientation: forward

Symbol	Name	Function Class
Gm39712	predicted gene, 39712	595 bp upstream
Itpkb	inositol 1,4,5-trisphosphate 3-kinase B	Intron
Rr424494	regulatory region 424494	60 bp proximal
Rr424495	regulatory region 424495	736 bp proximal