rs31368454 SNP Detail

Summary

• ID
  rs31368454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131566344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAT TTTTCTGGGA AATGACAATC
  Y
  CATGCTTTAG TTAACAAAAA TCCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	SM/J	WSB/EiJ
ss45024391	mCV25112456	ABI	CRAMUS_MOUSE	f	SNP	C		T				T
ss51366980	NES14473843	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	T		C	T		C		T		C
ss145480078	ENSMUSSNP6882862	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					C				C
ss319974770	CHEV_1_133535183	CHEVERUD	SCREENING_POP	f	SNP										C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	SM/J	WSB/EiJ
rs31368454					SNP	C	C	T	C	C	T	T	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51366980	NES14473843	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131566344 () rs orientation: forward

Symbol	Name	Function Class
Ctse	cathepsin E	within coordinates
Rr12195	regulatory region 12195	944 bp distal
Rr28482	regulatory region 28482	within coordinates
Rr366988	regulatory region 366988	209 bp downstream
Tssr8635	transcription start site region 8635	310 bp downstream
Tssr8636	transcription start site region 8636	268 bp downstream
Tssr8637	transcription start site region 8637	243 bp downstream
Tssr8638	transcription start site region 8638	202 bp downstream
Tssr8639	transcription start site region 8639	122 bp downstream
Tssr8640	transcription start site region 8640	110 bp downstream