rs31368928 SNP Detail

Summary

• ID
  rs31368928
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:57907733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAC AGGACAGATG TCTTTCCTCT
  K
  TTGGTTCTCT TCCTATGTAA CTCAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46212796	mCV24556728	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					T		G
ss47545598	NES11456794	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		T	G	G	G		G	G		T
ss144931823	ENSMUSSNP2845164	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss322670103	CHEV_8_59933496	CHEVERUD	SCREENING_POP	f	SNP													T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31368928					SNP	G	G	G	G	G	G	G	T	T	G	G	G	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47545598	NES11456794	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:57907733 () rs orientation: forward

Symbol	Name	Function Class
Scrg1	scrapie responsive gene 1	1224 bp upstream
Tssr77422	transcription start site region 77422	1199 bp upstream
Tssr77423	transcription start site region 77423	1278 bp upstream
Tssr77424	transcription start site region 77424	1303 bp upstream
Tssr77425	transcription start site region 77425	1321 bp upstream
Tssr77426	transcription start site region 77426	1341 bp upstream