rs31369684 SNP Detail

Summary

• ID
  rs31369684
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:57907803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTT AAAAGGCCTA GCTGAGAGTG
  S
  AGTGTGATGG TATATGCCTG TAATC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46279127	mCV24556730	ABI	CRAMUS_MOUSE	f	SNP		G	G					C		G
ss47545604	NES11456796	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		C	G	G	G		G	G	G	G		C
ss144931833	ENSMUSSNP2154717	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss322670105	CHEV_8_59933566	CHEVERUD	SCREENING_POP	f	SNP													C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31369684					SNP	G	G	G	G	G	G	G	C	C	G	G	G	C	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47545604	NES11456796	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:57907803 () rs orientation: forward

Symbol	Name	Function Class
Scrg1	scrapie responsive gene 1	1154 bp upstream
Tssr77422	transcription start site region 77422	1129 bp upstream
Tssr77423	transcription start site region 77423	1208 bp upstream
Tssr77424	transcription start site region 77424	1233 bp upstream
Tssr77425	transcription start site region 77425	1251 bp upstream
Tssr77426	transcription start site region 77426	1271 bp upstream