rs31369993 SNP Detail

Summary

• ID
  rs31369993
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89302817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTC CTTAGTGGCT CTTTTCCATT
  Y
  CATGTTTCCA TGTTTGCTTT TCCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45526466	mCV23407965	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	C
ss135474373	ENSMUSSNP765310	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
ss320836926	CHEV_3_89199432	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31369993					SNP	T	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89302817 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13429	CpG island 13429	794 bp distal
Cpgi13430	CpG island 13430	529 bp proximal
Gm15417	predicted gene 15417	within coordinates
Rr381	regulatory region 381	637 bp proximal
Rr397788	regulatory region 397788	1644 bp downstream
Rr580073	regulatory region 580073	1233 bp distal
Rr580074	regulatory region 580074	788 bp distal
Rr580075	regulatory region 580075	within coordinates
Rr580076	regulatory region 580076	212 bp proximal
Rr580077	regulatory region 580077	439 bp proximal
Rr580078	regulatory region 580078	1057 bp proximal
Tssr30100	transcription start site region 30100	1646 bp downstream
Tssr30101	transcription start site region 30101	1189 bp downstream
Tssr30102	transcription start site region 30102	199 bp upstream
Tssr34135	transcription start site region 34135	1826 bp upstream
Zbtb7b	zinc finger and BTB domain containing 7B	1841 bp upstream