rs31370619 SNP Detail

Summary

• ID
  rs31370619
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:57909068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCA GACAAAGCTT CACTTGTAAG
  R
  AGCCTCCTCG CTTCTCCTTT GCCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46228363	mCV22563271	ABI	CRAMUS_MOUSE	f	SNP		A					G	A
ss47545619	NES11456682	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A	A	A		A	A	G		G
ss144931838	ENSMUSSNP2423532	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss322670106	CHEV_8_59934831	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31370619					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47545619	NES11456682	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:57909068 () rs orientation: forward

Symbol	Name	Function Class
Rr663749	regulatory region 663749	1112 bp proximal
Scrg1	scrapie responsive gene 1	within coordinates
Tssr77422	transcription start site region 77422	130 bp downstream
Tssr77423	transcription start site region 77423	37 bp downstream
Tssr77424	transcription start site region 77424	16 bp downstream
Tssr77425	transcription start site region 77425	within coordinates
Tssr77426	transcription start site region 77426	6 bp upstream