rs31370904 SNP Detail

Summary

• ID
  rs31370904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12569909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG TCTGGTGAAA GAAACTGACA
  R
  GTGTAAGAAG ATAAGAAGCT CATGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46025126	mCV23046839	ABI	CRAMUS_MOUSE	f	SNP	G			A		G
ss51469409	NES13983777	PERLEGEN	MM_PANEL2	f	SNP	G	A	G		A	G	G		A	G	A		A
ss148340697	ENSMUSSNP2665015	ENSEMBL	ENSEMBL_Sanger	f	SNP	G					G
ss322106505	CHEV_7_13421331	CHEVERUD	SCREENING_POP	f	SNP								A				G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31370904					SNP	G	A	G	A	A	G	G	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51469409	NES13983777	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12569909 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18318	CpG island 18318	563 bp distal
Rr642383	regulatory region 642383	1211 bp distal
Rr642384	regulatory region 642384	1036 bp distal
Rr642385	regulatory region 642385	489 bp distal
Rr642386	regulatory region 642386	135 bp distal
Tssr64479	transcription start site region 64479	1171 bp downstream
Tssr64480	transcription start site region 64480	930 bp downstream
Tssr64481	transcription start site region 64481	721 bp downstream
Tssr64482	transcription start site region 64482	28 bp downstream
Zfp110	zinc finger protein 110	within coordinates