rs31372142 SNP Detail

Summary

• ID
  rs31372142
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89281347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAT TTAGAAATTT TATTTACTGT
  R
  AAATGGATTT AAAATTGTAT TTTAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46024946	mCV23843633	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss145284060	ENSMUSSNP4957206	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss322312439	CHEV_7_96780649	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31372142					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89281347 () rs orientation: forward

Symbol	Name	Function Class
A230065N10Rik	RIKEN cDNA A230065N10 gene	within coordinates
Cpgi19393	CpG island 19393	472 bp proximal
Me3	malic enzyme 3, NADP(+)-dependent, mitochondrial	145 bp upstream
Rr650822	regulatory region 650822	106 bp proximal
Rr650823	regulatory region 650823	975 bp proximal
Tssr67672	transcription start site region 67672	266 bp upstream
Tssr67673	transcription start site region 67673	278 bp upstream
Tssr67674	transcription start site region 67674	344 bp upstream
Tssr67675	transcription start site region 67675	360 bp upstream
Tssr67676	transcription start site region 67676	417 bp upstream
Tssr67677	transcription start site region 67677	550 bp upstream
Tssr67678	transcription start site region 67678	736 bp upstream
Tssr67679	transcription start site region 67679	812 bp upstream
Tssr67680	transcription start site region 67680	866 bp upstream